This is the Kratos Nightly report for GCC ========================================= Failed Applications : 0 Compiling Errors : 0 Compiling Warnings : 11 /home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_solvers/time_integration_methods/static_step_rotation_method.cpp:82:60: warning: type attributes ignored after type is already defined [-Wattributes] /home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_solvers/time_integration_methods/newmark_step_rotation_method.cpp:86:60: warning: type attributes ignored after type is already defined [-Wattributes] /home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_solvers/time_integration_methods/simo_step_rotation_method.cpp:91:60: warning: type attributes ignored after type is already defined [-Wattributes] /home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_solvers/time_integration_methods/emc_step_rotation_method.cpp:102:58: warning: type attributes ignored after type is already defined [-Wattributes] /home/ubuntu/Kratos/applications/DEM_application/DEM_application.h:104:32: warning: ‘Kratos::KratosDEMApplication::mAnalyticRigidFace3D3N’ will be initialized after [-Wreorder] /home/ubuntu/Kratos/applications/DEM_application/DEM_application.h:101:24: warning: ‘const Kratos::RigidFace3D Kratos::KratosDEMApplication::mRigidFace3D4N’ [-Wreorder] /home/ubuntu/Kratos/applications/DEM_application/DEM_application.cpp:409:1: warning: when initialized here [-Wreorder] /home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/custom_python/add_custom_strategies_to_python.cpp:58:41: warning: typedef ‘TablePrinterPointerType’ locally defined but not used [-Wunused-local-typedefs] /home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_python/add_custom_strategies_to_python.cpp:100:87: warning: typedef ‘ExplicitHamiltonStrategyType’ locally defined but not used [-Wunused-local-typedefs] /home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_python/add_custom_strategies_to_python.cpp:107:95: warning: typedef ‘ExplicitHamiltonBuilderAndSolverType’ locally defined but not used [-Wunused-local-typedefs] /home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_python/add_custom_strategies_to_python.cpp:111:90: warning: typedef ‘ExplicitHamiltonSchemeType’ locally defined but not used [-Wunused-local-typedefs] Linking Error : 0 -- The C compiler identification is GNU 5.4.0 -- The CXX compiler identification is GNU 5.4.0 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Git: /usr/bin/git (found version "2.7.4") fatal: Not a git repository (or any of the parent directories): .git additional default options were set for gcc CMAKE_CXX_FLAGS = -msse3 -std=c++11 -fopenmp -funroll-loops -Wall -std=c++11 -Wsuggest-override CMAKE_C_FLAGS = -msse3 -fopenmp -funroll-loops -Wall KRATOS_BUILD_TESTING not defined. Setting to ON -- Found PythonInterp: /usr/bin/python3.5 (found version "3.5.2") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so -- Performing Test HAS_CPP14_FLAG -- Performing Test HAS_CPP14_FLAG - Success KRATOS_EXCLUDE_OPENMP OpenMP included -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Boost version: 1.59.0 Boost Include: /home/ubuntu/CompiledLibs/boost_1_59_0 Boost Linkdir: /home/ubuntu/CompiledLibs/boost_1_59_0/stage/lib -- The Fortran compiler identification is GNU 5.4.0 -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- A library with BLAS API found. linker flags with blas = BLA_VENDOR = All -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. LAPACK = /usr/lib/liblapack.so/usr/lib/libblas/libblas.so.3.6.0 LAPACK modified = /usr/lib/lapack/liblapack.so.3.6.0/usr/lib/libblas/libblas.so.3.6.0 -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) -- Preparing local ZLIB compilation. -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of off64_t -- Check size of off64_t - done -- Looking for fseeko -- Looking for fseeko - found -- Looking for unistd.h -- Looking for unistd.h - found AMatrix not found. Please define the AMATRIX_DIR pointing to the AMatrix root directory. CMAKE_BUILD_TYPE ........ Custom WARNING: YOUR GIDPOST IS BEING COMPILED WITHOUT DEBUG (ALL ASSERTS WILL BE AVOIDED) -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- LTO enabled ***** LIST OF KRATOS APPLICATIONS THAT ARE GOING TO BE COMPILED: ***** CONVECTION_DIFFUSION_APPLICATION - ON STRUCTURAL_MECHANICS_APPLICATION - ON CONTACT_STRUCTURAL_MECHANICS_APPLICATION - ON SOLID_MECHANICS_APPLICATION - ON CONSTITUTIVE_MODELS_APPLICATION - ON THERMO_MECHANICAL_APPLICATION - ON POROMECHANICS_APPLICATION - ON DAM_APPLICATION - ON FLUID_DYNAMICS_APPLICATION - ON MESH_MOVING_APPLICATION - ON FSI_APPLICATION - ON COMPRESSIBLE_POTENTIAL_FLOW_APPLICATION - ON EMPIRE_APPLICATION - ON DEM_APPLICATION - ON PARTICLE_MECHANICS_APPLICATION - ON EXTERNAL_SOLVERS_APPLICATION - ON MESHING_APPLICATION - ON SHAPE_OPTIMIZATION_APPLICATION - ON MAPPING_APPLICATION - ON ********************************************************************** ********** LIST OF KRATOS APPLICATIONS THAT ARE SET TO OFF: ********** CONTACT_MECHANICS_APPLICATION - OFF MULTISCALE_APPLICATION - OFF PFEM_APPLICATION - OFF PFEM_SOLID_MECHANICS_APPLICATION - OFF PFEM_FLUID_DYNAMICS_APPLICATION - OFF SWIMMING_DEM_APPLICATION - OFF TRILINOS_APPLICATION - OFF METIS_APPLICATION - OFF ADJOINT_FLUID_APPLICATION - OFF ********************************************************************** **** configuring KratosExternalSolversApplication **** -- Try OpenMP Fortran flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp additional default options were set for gfortran ----------------------****************---------------------- CMAKE_Fortran_FLAGS = -fopenmp -w -w -O3 -ffree-line-length-none -ffixed-line-length-none -cpp -fPIC **** configuring KratosSolidMechanicsApplication **** **** configuring KratosConstitutiveModelsApplication **** **** configuring KratosConvectionDiffusionApplication **** **** configuring KratosMeshingApplication **** **** configuring KratosStructuralMechanicsApplication **** **** configuring KratosFluidDynamicsApplication **** **** configuring KratosMeshMovingApplication **** **** configuring KratosFSIApplication **** **** configuring KratosEmpireApplication **** **** configuring KratosDEMApplication **** **** configuring KratosThermoMechanicalApplication **** **** configuring KratosPoromechanicsApplication **** **** configuring KratosParticleMechanicsApplication **** **** configuring KratosDamApplication **** **** configuring KratosShapeOptimizationApplication **** **** configuring KratosContactStructuralMechanicsApplication **** **** configuring KratosMappingApplication **** **** configuring KratosCompressiblePotentialFlowApplication **** *****************************************************************************-------------******** /home/ubuntu/Kratos/external_libraries/triangle python libraries to be installed are: /usr/lib/x86_64-linux-gnu/libpython3.5m.so.1.0 -------------------------------- standard install dir /home/ubuntu/Kratos installed blas = /usr/lib/libblas/libblas.so.3.6.0 installed lapack = /usr/lib/lapack/liblapack.so.3.6.0/usr/lib/libblas/libblas.so.3.6.0 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: PARMETIS_ROOT_DIR TRILINOS_ROOT -- Build files have been written to: /home/ubuntu/Kratos/cmake_gcc UnitTests: ============= .............x........................................s...ss.s..............................................................sss ---------------------------------------------------------------------- Ran 127 tests in 9.369s OK (skipped=7, expected failures=1) Running tests for KratosCore /home/ubuntu/Kratos/kratos/tests/test_KratosCore.py Running tests for MeshingApplication [Warning]: "nightly" test suite is empty /home/ubuntu/Kratos/applications//MeshingApplication/tests/test_MeshingApplication.py Running tests for EmpireApplication /home/ubuntu/Kratos/applications//EmpireApplication/tests/test_EmpireApplication.py [Warning]: No test script found for EmpireApplication Running tests for ConstitutiveModelsApplication ....... ---------------------------------------------------------------------- Ran 7 tests in 3.751s OK /home/ubuntu/Kratos/applications//ConstitutiveModelsApplication/tests/test_ConstitutiveModelsApplication.py Running tests for ThermoMechanicalApplication /home/ubuntu/Kratos/applications//ThermoMechanicalApplication/tests/test_ThermoMechanicalApplication.py [Warning]: No test script found for ThermoMechanicalApplication Running tests for StructuralMechanicsApplication ..........................................................s................................................................................sss ---------------------------------------------------------------------- Ran 142 tests in 199.982s OK (skipped=4) /home/ubuntu/Kratos/applications//StructuralMechanicsApplication/tests/test_StructuralMechanicsApplication.py Running tests for DamApplication /home/ubuntu/Kratos/applications//DamApplication/tests/test_DamApplication.py [Warning]: No test script found for DamApplication Running tests for CompressiblePotentialFlowApplication [Warning]: "nightly" test suite is empty /home/ubuntu/Kratos/applications//CompressiblePotentialFlowApplication/tests/test_CompressiblePotentialFlowApplication.py Running tests for SolidMechanicsApplication ...................................... ---------------------------------------------------------------------- Ran 38 tests in 195.744s OK /home/ubuntu/Kratos/applications//SolidMechanicsApplication/tests/test_SolidMechanicsApplication.py Running tests for ShapeOptimizationApplication ..... ---------------------------------------------------------------------- Ran 5 tests in 178.087s OK /home/ubuntu/Kratos/applications//ShapeOptimizationApplication/tests/test_ShapeOptimizationApplication.py Running tests for MappingApplication ... ---------------------------------------------------------------------- Ran 3 tests in 0.868s OK /home/ubuntu/Kratos/applications//MappingApplication/tests/test_MappingApplication.py Running tests for PoromechanicsApplication /home/ubuntu/Kratos/applications//PoromechanicsApplication/tests/test_PoromechanicsApplication.py [Warning]: No test script found for PoromechanicsApplication Running tests for FluidDynamicsApplication ............................../home/ubuntu/Kratos/applications//FluidDynamicsApplication/tests/test_FluidDynamicsApplication.py Running tests for ExternalSolversApplication /home/ubuntu/Kratos/applications//ExternalSolversApplication/tests/test_ExternalSolversApplication.py [Warning]: No test script found for ExternalSolversApplication Running tests for ParticleMechanicsApplication /home/ubuntu/Kratos/applications//ParticleMechanicsApplication/tests/test_ParticleMechanicsApplication.py [Warning]: No test script found for ParticleMechanicsApplication Running tests for DEMApplication ...x ---------------------------------------------------------------------- Ran 4 tests in 25.363s OK (expected failures=1) /home/ubuntu/Kratos/applications//DEM_application/tests/test_DEMApplication.py [Warning]: Application has been found in "DEM_application" directory but it was expected in "DEMApplication". Please check the naming convention. Running tests for ContactStructuralMechanicsApplication ................................................. ---------------------------------------------------------------------- Ran 49 tests in 289.210s OK /home/ubuntu/Kratos/applications//ContactStructuralMechanicsApplication/tests/test_ContactStructuralMechanicsApplication.py Running tests for MeshMovingApplication ........ ---------------------------------------------------------------------- Ran 8 tests in 17.807s OK /home/ubuntu/Kratos/applications//MeshMovingApplication/tests/test_MeshMovingApplication.py Running tests for FSIApplication .....Check failed in file /home/ubuntu/CompiledLibs/boost_1_59_0/boost/numeric/ublas/lu.hpp at line 298: detail::expression_type_check (prod (triangular_adaptor (m), e), cm2) E.............. ====================================================================== ERROR: testFSIProblemEmulatorWithMVQN (FSI_problem_emulator_test.FSIProblemEmulatorTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/ubuntu/Kratos/applications/FSIapplication/tests/FSI_problem_emulator_test.py", line 63, in testFSIProblemEmulatorWithMVQN self.RunTestCase() File "/home/ubuntu/Kratos/applications/FSIapplication/tests/FSI_problem_emulator_test.py", line 172, in RunTestCase self.coupling_utility.UpdateSolution(disp_residual, self.iteration_value) RuntimeError: Error: internal logic in /home/ubuntu/Kratos/applications/FSIapplication/custom_utilities/mvqn_convergence_accelerator.hpp:303:void MVQNFullJacobianConvergenceAccelerator::UpdateSolution(const VectorType&, MVQNFullJacobianConvergenceAccelerator::VectorType&) [with TSpace = UblasSpace, boost::numeric::ublas::vector >; MVQNFullJacobianConvergenceAccelerator::VectorType = boost::numeric::ublas::vector] Stdout: -Structure- model part ---------------------------------------------------------------------- Ran 20 tests in 4.639s FAILED (errors=1) /home/ubuntu/Kratos/applications//FSIapplication/tests/test_FSIApplication.py [Warning]: Application has been found in "FSIapplication" directory but it was expected in "FSIApplication". Please check the naming convention. Running tests for ConvectionDiffusionApplication ..... ---------------------------------------------------------------------- Ran 5 tests in 4.166s OK | / | ' / __| _` | __| _ \ __| . \ | ( | | ( |\__ \ _|\_\_| \__,_|\__|\___/ ____/ Multi-Physics 6.0.0--Custom .......................................................................................................................................................................................................................................................................................................................................... Ran 330 of 331 test cases in 2.1753s. OK. /home/ubuntu/Kratos/applications//convection_diffusion_application/tests/test_ConvectionDiffusionApplication.py [Warning]: Application has been found in "convection_diffusion_application" directory but it was expected in "ConvectionDiffusionApplication". Please check the naming convention. Running cpp tests