This is the Kratos Nightly report for CLANG =========================================== Failed Applications : 0 Compiling Errors : 0 Compiling Warnings : 7 /home/ubuntu/Kratos/kratos/utilities/bounding_box_utilities.h:218:16: warning: private field 'mr_model_part' is not used [-Wunused-private-field] /home/ubuntu/Kratos/kratos/utilities/bounding_box_utilities.h:219:18: warning: private field 'mrdimension' is not used [-Wunused-private-field] /home/ubuntu/Kratos/applications/MeshingApplication/custom_utilities/uniform_refine_utility.cpp:360:42: warning: suggest braces around initialization of subobject [-Wmissing-braces] /home/ubuntu/Kratos/applications/MeshingApplication/custom_utilities/uniform_refine_utility.cpp:416:42: warning: suggest braces around initialization of subobject [-Wmissing-braces] /home/ubuntu/Kratos/applications/MeshingApplication/custom_utilities/uniform_refine_utility.cpp:360:42: warning: suggest braces around initialization of subobject [-Wmissing-braces] /home/ubuntu/Kratos/applications/MeshingApplication/custom_utilities/uniform_refine_utility.cpp:416:42: warning: suggest braces around initialization of subobject [-Wmissing-braces] /home/ubuntu/Kratos/kratos/utilities/geometrical_sensitivity_utility.h:32:1: warning: 'ShapeParameter' defined as a struct here but previously declared as a class [-Wmismatched-tags] Linking Error : 0 -- The C compiler identification is Clang 3.8.0 -- The CXX compiler identification is Clang 3.8.0 -- Check for working C compiler: /home/ubuntu/CompiledLibs/clang-3.8.0-16.04-prebuilt/bin/clang -- Check for working C compiler: /home/ubuntu/CompiledLibs/clang-3.8.0-16.04-prebuilt/bin/clang -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /home/ubuntu/CompiledLibs/clang-3.8.0-16.04-prebuilt/bin/clang++ -- Check for working CXX compiler: /home/ubuntu/CompiledLibs/clang-3.8.0-16.04-prebuilt/bin/clang++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Git: /usr/bin/git (found version "2.7.4") fatal: Not a git repository (or any of the parent directories): .git additional default options were set for clang compiler CMAKE_CXX_FLAGS = -msse3 -std=c++11 -fopenmp -fPIC -funroll-loops -Wall -Wno-unused-local-typedef -Wno-unknown-pragmas CMAKE_C_FLAGS = -msse3 -fopenmp -fPIC -funroll-loops -Wall -Wno-unknown-pragmas KRATOS_BUILD_TESTING not defined. Setting to ON -- Found PythonInterp: /usr/bin/python3.5 (found version "3.5.2") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so -- Performing Test HAS_CPP14_FLAG -- Performing Test HAS_CPP14_FLAG - Success KRATOS_EXCLUDE_OPENMP OpenMP included -- Try OpenMP C flag = [-fopenmp=libomp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp=libomp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp=libomp -- Boost version: 1.59.0 Boost Include: /home/ubuntu/CompiledLibs/boost_1_59_0 Boost Linkdir: /home/ubuntu/CompiledLibs/boost_1_59_0/stage/lib -- The Fortran compiler identification is GNU 5.4.0 -- Check for working Fortran compiler: /usr/bin/f95 -- Check for working Fortran compiler: /usr/bin/f95 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/f95 supports Fortran 90 -- Checking whether /usr/bin/f95 supports Fortran 90 -- yes -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- A library with BLAS API found. linker flags with blas = BLA_VENDOR = All -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. LAPACK = /usr/lib/liblapack.so/usr/lib/libblas/libblas.so.3.6.0 LAPACK modified = /usr/lib/lapack/liblapack.so.3.6.0/usr/lib/libblas/libblas.so.3.6.0 -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) -- Preparing local ZLIB compilation. -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of off64_t -- Check size of off64_t - done -- Looking for fseeko -- Looking for fseeko - found -- Looking for unistd.h -- Looking for unistd.h - found AMatrix not found. Please define the AMATRIX_DIR pointing to the AMatrix root directory. CMAKE_BUILD_TYPE ........ Custom WARNING: YOUR GIDPOST IS BEING COMPILED WITHOUT DEBUG (ALL ASSERTS WILL BE AVOIDED) -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Failed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Failed -- LTO disabled (not supported by the compiler and/or linker) ***** LIST OF KRATOS APPLICATIONS THAT ARE GOING TO BE COMPILED: ***** CONVECTION_DIFFUSION_APPLICATION - ON STRUCTURAL_MECHANICS_APPLICATION - ON CONTACT_STRUCTURAL_MECHANICS_APPLICATION - ON SOLID_MECHANICS_APPLICATION - ON CONSTITUTIVE_MODELS_APPLICATION - ON THERMO_MECHANICAL_APPLICATION - ON POROMECHANICS_APPLICATION - ON DAM_APPLICATION - ON FLUID_DYNAMICS_APPLICATION - ON MESH_MOVING_APPLICATION - ON FSI_APPLICATION - ON EMPIRE_APPLICATION - ON DEM_APPLICATION - ON PARTICLE_MECHANICS_APPLICATION - ON EXTERNAL_SOLVERS_APPLICATION - ON MESHING_APPLICATION - ON SHAPE_OPTIMIZATION_APPLICATION - ON MAPPING_APPLICATION - ON ********************************************************************** ********** LIST OF KRATOS APPLICATIONS THAT ARE SET TO OFF: ********** CONTACT_MECHANICS_APPLICATION - OFF MULTISCALE_APPLICATION - OFF PFEM_APPLICATION - OFF PFEM_SOLID_MECHANICS_APPLICATION - OFF PFEM_FLUID_DYNAMICS_APPLICATION - OFF SWIMMING_DEM_APPLICATION - OFF TRILINOS_APPLICATION - OFF METIS_APPLICATION - OFF ADJOINT_FLUID_APPLICATION - OFF ********************************************************************** **** configuring KratosExternalSolversApplication **** -- Try OpenMP Fortran flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp=libomp additional default options were set for gfortran ----------------------****************---------------------- CMAKE_Fortran_FLAGS = -fopenmp -w -w -O3 -ffree-line-length-none -ffixed-line-length-none -cpp -fPIC **** configuring KratosSolidMechanicsApplication **** **** configuring KratosConstitutiveModelsApplication **** **** configuring KratosConvectionDiffusionApplication **** **** configuring KratosMeshingApplication **** **** configuring KratosStructuralMechanicsApplication **** **** configuring KratosFluidDynamicsApplication **** **** configuring KratosMeshMovingApplication **** **** configuring KratosFSIApplication **** **** configuring KratosEmpireApplication **** **** configuring KratosDEMApplication **** **** configuring KratosThermoMechanicalApplication **** **** configuring KratosPoromechanicsApplication **** **** configuring KratosParticleMechanicsApplication **** **** configuring KratosDamApplication **** **** configuring KratosShapeOptimizationApplication **** **** configuring KratosContactStructuralMechanicsApplication **** **** configuring KratosMappingApplication **** *****************************************************************************-------------******** /home/ubuntu/Kratos/external_libraries/triangle python libraries to be installed are: /usr/lib/x86_64-linux-gnu/libpython3.5m.so.1.0 -------------------------------- standard install dir /home/ubuntu/Kratos installed blas = /usr/lib/libblas/libblas.so.3.6.0 installed lapack = /usr/lib/lapack/liblapack.so.3.6.0/usr/lib/libblas/libblas.so.3.6.0 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: PARMETIS_ROOT_DIR TRILINOS_ROOT -- Build files have been written to: /home/ubuntu/Kratos/cmake_clang UnitTests: ============= .............x........................................s...ss.s........................................................... ---------------------------------------------------------------------- Ran 121 tests in 58.744s OK (skipped=4, expected failures=1) Running tests for KratosCore /home/ubuntu/Kratos/kratos/tests/test_KratosCore.py Running tests for MeshingApplication [Warning]: "nightly" test suite is empty /home/ubuntu/Kratos/applications//MeshingApplication/tests/test_MeshingApplication.py Running tests for EmpireApplication /home/ubuntu/Kratos/applications//EmpireApplication/tests/test_EmpireApplication.py [Warning]: No test script found for EmpireApplication Running tests for ConstitutiveModelsApplication ....... ---------------------------------------------------------------------- Ran 7 tests in 3.283s OK /home/ubuntu/Kratos/applications//ConstitutiveModelsApplication/tests/test_ConstitutiveModelsApplication.py Running tests for ThermoMechanicalApplication /home/ubuntu/Kratos/applications//ThermoMechanicalApplication/tests/test_ThermoMechanicalApplication.py [Warning]: No test script found for ThermoMechanicalApplication Running tests for StructuralMechanicsApplication ..........................................................s..............................................................................sss ---------------------------------------------------------------------- Ran 140 tests in 234.678s OK (skipped=4) /home/ubuntu/Kratos/applications//StructuralMechanicsApplication/tests/test_StructuralMechanicsApplication.py Running tests for DamApplication /home/ubuntu/Kratos/applications//DamApplication/tests/test_DamApplication.py [Warning]: No test script found for DamApplication Running tests for SolidMechanicsApplication ...................................... ---------------------------------------------------------------------- Ran 38 tests in 203.969s OK /home/ubuntu/Kratos/applications//SolidMechanicsApplication/tests/test_SolidMechanicsApplication.py Running tests for ShapeOptimizationApplication ..... ---------------------------------------------------------------------- Ran 5 tests in 173.889s OK /home/ubuntu/Kratos/applications//ShapeOptimizationApplication/tests/test_ShapeOptimizationApplication.py Running tests for MappingApplication ... ---------------------------------------------------------------------- Ran 3 tests in 0.993s OK /home/ubuntu/Kratos/applications//MappingApplication/tests/test_MappingApplication.py Running tests for PoromechanicsApplication /home/ubuntu/Kratos/applications//PoromechanicsApplication/tests/test_PoromechanicsApplication.py [Warning]: No test script found for PoromechanicsApplication Running tests for FluidDynamicsApplication .............................. ---------------------------------------------------------------------- Ran 30 tests in 208.229s OK /home/ubuntu/Kratos/applications//FluidDynamicsApplication/tests/test_FluidDynamicsApplication.py Running tests for ExternalSolversApplication /home/ubuntu/Kratos/applications//ExternalSolversApplication/tests/test_ExternalSolversApplication.py [Warning]: No test script found for ExternalSolversApplication Running tests for ParticleMechanicsApplication /home/ubuntu/Kratos/applications//ParticleMechanicsApplication/tests/test_ParticleMechanicsApplication.py [Warning]: No test script found for ParticleMechanicsApplication Running tests for DEMApplication .... ---------------------------------------------------------------------- Ran 4 tests in 23.376s OK /home/ubuntu/Kratos/applications//DEM_application/tests/test_DEMApplication.py [Warning]: Application has been found in "DEM_application" directory but it was expected in "DEMApplication". Please check the naming convention. Running tests for ContactStructuralMechanicsApplication ................................................. ---------------------------------------------------------------------- Ran 49 tests in 285.317s OK /home/ubuntu/Kratos/applications//ContactStructuralMechanicsApplication/tests/test_ContactStructuralMechanicsApplication.py Running tests for MeshMovingApplication ........ ---------------------------------------------------------------------- Ran 8 tests in 18.789s OK /home/ubuntu/Kratos/applications//MeshMovingApplication/tests/test_MeshMovingApplication.py Running tests for FSIApplication .....Check failed in file /home/ubuntu/CompiledLibs/boost_1_59_0/boost/numeric/ublas/lu.hpp at line 298: detail::expression_type_check (prod (triangular_adaptor (m), e), cm2) E.............. ====================================================================== ERROR: testFSIProblemEmulatorWithMVQN (FSI_problem_emulator_test.FSIProblemEmulatorTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/ubuntu/Kratos/applications/FSIapplication/tests/FSI_problem_emulator_test.py", line 63, in testFSIProblemEmulatorWithMVQN self.RunTestCase() File "/home/ubuntu/Kratos/applications/FSIapplication/tests/FSI_problem_emulator_test.py", line 167, in RunTestCase self.coupling_utility.UpdateSolution(disp_residual, self.iteration_value) RuntimeError: Error: internal logic in /home/ubuntu/Kratos/applications/FSIapplication/custom_utilities/mvqn_convergence_accelerator.hpp:303:virtual void MVQNFullJacobianConvergenceAccelerator, boost::numeric::Vector > >::UpdateSolution(const VectorType &, VectorType &) [TSpace = UblasSpace, boost::numeric::Vector >] ---------------------------------------------------------------------- Ran 20 tests in 5.482s FAILED (errors=1) /home/ubuntu/Kratos/applications//FSIapplication/tests/test_FSIApplication.py [Warning]: Application has been found in "FSIapplication" directory but it was expected in "FSIApplication". Please check the naming convention. Running tests for ConvectionDiffusionApplication ..... ---------------------------------------------------------------------- Ran 5 tests in 4.355s OK | / | ' / __| _` | __| _ \ __| . \ | ( | | ( |\__ \ _|\_\_| \__,_|\__|\___/ ____/ Multi-Physics 6.0.0--Custom ....................................................................................................................................................................................................................................................................................................................................... Ran 327 of 328 test cases in 2.68298s. OK. /home/ubuntu/Kratos/applications//convection_diffusion_application/tests/test_ConvectionDiffusionApplication.py [Warning]: Application has been found in "convection_diffusion_application" directory but it was expected in "ConvectionDiffusionApplication". Please check the naming convention. Running cpp tests