This is the Kratos Nightly report for GCC
=========================================


Failed Applications : 0
Compiling Errors    : 0
Compiling Warnings  : 9
/home/ubuntu/Kratos/kratos/processes/calculate_discontinuous_distance_to_skin_process.cpp:227:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
/home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_solvers/time_integration_methods/static_step_rotation_method.cpp:82:60: warning: type attributes ignored after type is already defined [-Wattributes]
/home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_solvers/time_integration_methods/newmark_step_rotation_method.cpp:85:60: warning: type attributes ignored after type is already defined [-Wattributes]
/home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_solvers/time_integration_methods/simo_step_rotation_method.cpp:91:60: warning: type attributes ignored after type is already defined [-Wattributes]
/home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_solvers/time_integration_methods/emc_step_rotation_method.cpp:102:58: warning: type attributes ignored after type is already defined [-Wattributes]
/home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_python/add_custom_strategies_to_python.cpp:96:87: warning: typedef ‘ExplicitHamiltonStrategyType’ locally defined but not used [-Wunused-local-typedefs]
/home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_python/add_custom_strategies_to_python.cpp:103:95: warning: typedef ‘ExplicitHamiltonBuilderAndSolverType’ locally defined but not used [-Wunused-local-typedefs]
/home/ubuntu/Kratos/applications/SolidMechanicsApplication/custom_python/add_custom_strategies_to_python.cpp:107:90: warning: typedef ‘ExplicitHamiltonSchemeType’ locally defined but not used [-Wunused-local-typedefs]
/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/custom_response_functions/response_utilities/eigenfrequency_response_function_utility.h:342:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
Linking Error       : 0


-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Git: /usr/bin/git (found version "2.7.4") 
fatal: Not a git repository (or any of the parent directories): .git
additional default options were set for gcc
CMAKE_CXX_FLAGS =  -msse3 -std=c++11 -fopenmp -funroll-loops -Wall -std=c++11 -Wsuggest-override
CMAKE_C_FLAGS =  -msse3 -fopenmp -funroll-loops -Wall
KRATOS_BUILD_TESTING not defined. Setting to ON
-- Found PythonInterp: /usr/bin/python3.5 (found version "3.5.2") 
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so
-- Performing Test HAS_CPP14_FLAG
-- Performing Test HAS_CPP14_FLAG - Success
KRATOS_EXCLUDE_OPENMP
OpenMP included
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp  
-- Boost version: 1.59.0
Boost Include: /home/ubuntu/CompiledLibs/boost_1_59_0
Boost Linkdir: /home/ubuntu/CompiledLibs/boost_1_59_0/stage/lib
-- The Fortran compiler identification is GNU 5.4.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE  
-- A library with BLAS API found.
linker flags with blas =
BLA_VENDOR = All
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
LAPACK = /usr/lib/liblapack.so/usr/lib/libblas/libblas.so.3.6.0
LAPACK modified = /usr/lib/lapack/liblapack.so.3.6.0/usr/lib/libblas/libblas.so.3.6.0
-- Could NOT find ZLIB (missing:  ZLIB_LIBRARY ZLIB_INCLUDE_DIR) 
-- Preparing local ZLIB compilation.
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of off64_t
-- Check size of off64_t - done
-- Looking for fseeko
-- Looking for fseeko - found
-- Looking for unistd.h
-- Looking for unistd.h - found
AMatrix not found. Please define the AMATRIX_DIR pointing to the AMatrix root directory.
 
CMAKE_BUILD_TYPE ........ Custom
 
WARNING: YOUR GIDPOST IS BEING COMPILED  WITHOUT DEBUG (ALL ASSERTS WILL BE AVOIDED)
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- LTO enabled
 
 
***** LIST OF KRATOS APPLICATIONS THAT ARE GOING TO BE COMPILED: *****
 
                CONVECTION_DIFFUSION_APPLICATION - ON
                STRUCTURAL_MECHANICS_APPLICATION - ON
                CONTACT_STRUCTURAL_MECHANICS_APPLICATION - ON
                SOLID_MECHANICS_APPLICATION - ON
                CONSTITUTIVE_MODELS_APPLICATION - ON
                THERMO_MECHANICAL_APPLICATION - ON
                POROMECHANICS_APPLICATION - ON
                DAM_APPLICATION - ON
                FLUID_DYNAMICS_APPLICATION - ON
                ALE_APPLICATION - ON
                FSI_APPLICATION - ON
                EMPIRE_APPLICATION - ON
                DEM_APPLICATION - ON
                PARTICLE_MECHANICS_APPLICATION - ON
                EXTERNAL_SOLVERS_APPLICATION - ON
                MESHING_APPLICATION - ON
                SHAPE_OPTIMIZATION_APPLICATION - ON
                MAPPING_APPLICATION - ON
 
**********************************************************************
 
********** LIST OF KRATOS APPLICATIONS THAT ARE SET TO OFF: **********
 
                CONTACT_MECHANICS_APPLICATION - OFF
                MULTISCALE_APPLICATION - OFF
                PFEM_APPLICATION - OFF
                PFEM_SOLID_MECHANICS_APPLICATION - OFF
                PFEM_FLUID_DYNAMICS_APPLICATION - OFF
                SWIMMING_DEM_APPLICATION - OFF
                TRILINOS_APPLICATION - OFF
                METIS_APPLICATION - OFF
                ADJOINT_FLUID_APPLICATION - OFF
 
**********************************************************************
 
 
**** configuring KratosExternalSolversApplication ****
-- Try OpenMP Fortran flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp  
additional default options were set for gfortran
----------------------****************---------------------- CMAKE_Fortran_FLAGS =  -fopenmp -w -w -O3 -ffree-line-length-none -ffixed-line-length-none -cpp -fPIC
**** configuring KratosSolidMechanicsApplication ****
**** configuring KratosConstitutiveModelsApplication ****
**** configuring KratosConvectionDiffusionApplication ****
**** configuring KratosMeshingApplication ****
**** configuring KratosStructuralMechanicsApplication ****
**** configuring KratosFluidDynamicsApplication ****
**** configuring KratosALEApplication ****
**** configuring KratosFSIApplication ****
**** configuring KratosEmpireApplication ****
**** configuring KratosDEMApplication ****
**** configuring KratosThermoMechanicalApplication ****
**** configuring KratosPoromechanicsApplication ****
**** configuring KratosParticleMechanicsApplication ****
**** configuring KratosDamApplication ****
**** configuring KratosShapeOptimizationApplication ****
**** configuring KratosContactStructuralMechanicsApplication ****
**** configuring KratosMappingApplication ****
*****************************************************************************-------------******** /home/ubuntu/Kratos/external_libraries/triangle
python libraries to be installed are: /usr/lib/x86_64-linux-gnu/libpython3.5m.so.1.0
--------------------------------  standard install dir /home/ubuntu/Kratos
installed blas = /usr/lib/libblas/libblas.so.3.6.0
installed lapack = /usr/lib/lapack/liblapack.so.3.6.0/usr/lib/libblas/libblas.so.3.6.0
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    PARMETIS_ROOT_DIR
    TRILINOS_ROOT


-- Build files have been written to: /home/ubuntu/Kratos/cmake_gcc


UnitTests:    

============= 

 |  /           |             
 ' /   __| _` | __|  _ \   __|
 . \  |   (   | |   (   |\__ \ 
_|\_\_|  \__,_|\__|\___/ ____/
           Multi-Physics 6.0.0--Custom
.............x........................................s...ss.s...........................................................
----------------------------------------------------------------------
Ran 121 tests in 55.581s

OK (skipped=4, expected failures=1)
Running tests for KratosCore
/home/ubuntu/Kratos/kratos/tests/test_KratosCore.py
Running tests for MeshingApplication
[Warning]: "nightly" test suite is empty
/home/ubuntu/Kratos/applications//MeshingApplication/tests/test_MeshingApplication.py
Running tests for EmpireApplication
/home/ubuntu/Kratos/applications//EmpireApplication/tests/test_EmpireApplication.py
[Warning]: No test script found for EmpireApplication
Running tests for ConstitutiveModelsApplication
.......
----------------------------------------------------------------------
Ran 7 tests in 3.605s

OK
/home/ubuntu/Kratos/applications//ConstitutiveModelsApplication/tests/test_ConstitutiveModelsApplication.py
Running tests for ThermoMechanicalApplication
/home/ubuntu/Kratos/applications//ThermoMechanicalApplication/tests/test_ThermoMechanicalApplication.py
[Warning]: No test script found for ThermoMechanicalApplication
Running tests for StructuralMechanicsApplication
..........................................................s.EE...........................................................................sss
======================================================================
ERROR: test_execution (structural_response_function_test_factory.TestMassResponseFunction)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/tests/structural_response_function_test_factory.py", line 74, in test_execution
    self.assertAlmostEqual(self.value, 1569.9999999999998)
  File "/usr/lib/python3.5/unittest/case.py", line 861, in assertAlmostEqual
    if round(abs(second-first), places) == 0:
TypeError: unsupported operand type(s) for -: 'float' and 'NoneType'

Stdout:
/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/tests/response_function_tests

======================================================================
ERROR: test_execution (structural_response_function_test_factory.TestStrainEnergyResponseFunction)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/tests/structural_response_function_test_factory.py", line 85, in test_execution
    self.assertAlmostEqual(self.value, 8.484005297318718e-05)
  File "/usr/lib/python3.5/unittest/case.py", line 861, in assertAlmostEqual
    if round(abs(second-first), places) == 0:
TypeError: unsupported operand type(s) for -: 'float' and 'NoneType'

Stdout:
/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/tests/response_function_tests

----------------------------------------------------------------------
Ran 140 tests in 199.126s

FAILED (errors=2, skipped=4)
/home/ubuntu/Kratos/applications//StructuralMechanicsApplication/tests/test_StructuralMechanicsApplication.py
Running tests for DamApplication
/home/ubuntu/Kratos/applications//DamApplication/tests/test_DamApplication.py
[Warning]: No test script found for DamApplication
Running tests for SolidMechanicsApplication
......................................
----------------------------------------------------------------------
Ran 38 tests in 197.238s

OK
/home/ubuntu/Kratos/applications//SolidMechanicsApplication/tests/test_SolidMechanicsApplication.py
Running tests for ShapeOptimizationApplication
.....
----------------------------------------------------------------------
Ran 5 tests in 178.729s

OK
/home/ubuntu/Kratos/applications//ShapeOptimizationApplication/tests/test_ShapeOptimizationApplication.py
Running tests for MappingApplication
...
----------------------------------------------------------------------
Ran 3 tests in 0.845s

OK
/home/ubuntu/Kratos/applications//MappingApplication/tests/test_MappingApplication.py
Running tests for PoromechanicsApplication
/home/ubuntu/Kratos/applications//PoromechanicsApplication/tests/test_PoromechanicsApplication.py
[Warning]: No test script found for PoromechanicsApplication
Running tests for ALEApplication
........
----------------------------------------------------------------------
Ran 8 tests in 17.833s

OK
/home/ubuntu/Kratos/applications//ALEapplication/tests/test_ALEApplication.py
[Warning]: Application has been found in "ALEapplication" directory but it was expected in "ALEApplication". Please check the naming convention.
Running tests for FluidDynamicsApplication
..............................
----------------------------------------------------------------------
Ran 30 tests in 179.415s

OK
/home/ubuntu/Kratos/applications//FluidDynamicsApplication/tests/test_FluidDynamicsApplication.py
Running tests for ExternalSolversApplication
/home/ubuntu/Kratos/applications//ExternalSolversApplication/tests/test_ExternalSolversApplication.py
[Warning]: No test script found for ExternalSolversApplication
Running tests for ParticleMechanicsApplication
/home/ubuntu/Kratos/applications//ParticleMechanicsApplication/tests/test_ParticleMechanicsApplication.py
[Warning]: No test script found for ParticleMechanicsApplication
Running tests for DEMApplication
....
----------------------------------------------------------------------
Ran 4 tests in 23.997s

OK
/home/ubuntu/Kratos/applications//DEM_application/tests/test_DEMApplication.py
[Warning]: Application has been found in "DEM_application" directory but it was expected in "DEMApplication". Please check the naming convention.
Running tests for ContactStructuralMechanicsApplication
.................................................
----------------------------------------------------------------------
Ran 49 tests in 287.721s

OK
/home/ubuntu/Kratos/applications//ContactStructuralMechanicsApplication/tests/test_ContactStructuralMechanicsApplication.py
Running tests for FSIApplication
....................
----------------------------------------------------------------------
Ran 20 tests in 3.362s

OK
/home/ubuntu/Kratos/applications//FSIapplication/tests/test_FSIApplication.py
[Warning]: Application has been found in "FSIapplication" directory but it was expected in "FSIApplication". Please check the naming convention.
Running tests for ConvectionDiffusionApplication
.....
----------------------------------------------------------------------
Ran 5 tests in 4.153s

OK
..........................................................................................................................................................................................................................................................................................................................
Ran 314 of 315 test cases in 2.18937s. OK.
/home/ubuntu/Kratos/applications//convection_diffusion_application/tests/test_ConvectionDiffusionApplication.py
[Warning]: Application has been found in "convection_diffusion_application" directory but it was expected in "ConvectionDiffusionApplication". Please check the naming convention.
Running cpp tests