This is the Kratos Nightly report for GCC ========================================= Failed Applications : 0 Compiling Errors : 0 Compiling Warnings : 0 Linking Error : 0 -- The C compiler identification is GNU 5.4.0 -- The CXX compiler identification is GNU 5.4.0 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Git: /usr/bin/git (found version "2.7.4") fatal: Not a git repository (or any of the parent directories): .git additional default options were set for gcc CMAKE_CXX_FLAGS = -msse3 -std=c++11 -fopenmp -funroll-loops -Wall -std=c++11 CMAKE_C_FLAGS = -msse3 -fopenmp -funroll-loops -Wall KRATOS_BUILD_TESTING not defined. Setting to ON KRATOS_EXCLUDE_OPENMP OpenMP included -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp Using component: python -- Boost version: 1.59.0 -- Found the following Boost libraries: -- python Boost Include: /home/ubuntu/CompiledLibs/boost_1_59_0 Boost Linkdir: /home/ubuntu/CompiledLibs/boost_1_59_0/stage/lib Boostlib used: /home/ubuntu/CompiledLibs/boost_1_59_0/stage/lib/libboost_python.so.1.59.0 -- Found PythonLibs: /usr/lib/python3.5/config-3.5m-x86_64-linux-gnu/libpython3.5m.so (found version "3.5.2") -- The Fortran compiler identification is GNU 5.4.0 -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- A library with BLAS API found. linker flags with blas = BLA_VENDOR = All -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. LAPACK = /usr/lib/liblapack.so/usr/lib/libblas/libblas.so.3.6.0 LAPACK modified = /usr/lib/lapack/liblapack.so.3.6.0/usr/lib/libblas/libblas.so.3.6.0 -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) -- Preparing local ZLIB compilation. -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of off64_t -- Check size of off64_t - done -- Looking for fseeko -- Looking for fseeko - found -- Looking for unistd.h -- Looking for unistd.h - found CMAKE_BUILD_TYPE ........ Custom WARNING: YOUR GIDPOST IS BEING COMPILED WITHOUT DEBUG (ALL ASSERTS WILL BE AVOIDED) ***** LIST OF KRATOS APPLICATIONS THAT ARE GOING TO BE COMPILED: ***** CONVECTION_DIFFUSION_APPLICATION - ON STRUCTURAL_MECHANICS_APPLICATION - ON CONTACT_STRUCTURAL_MECHANICS_APPLICATION - ON SOLID_MECHANICS_APPLICATION - ON CONSTITUTIVE_MODELS_APPLICATION - ON THERMO_MECHANICAL_APPLICATION - ON POROMECHANICS_APPLICATION - ON DAM_APPLICATION - ON FLUID_DYNAMICS_APPLICATION - ON ALE_APPLICATION - ON FSI_APPLICATION - ON EMPIRE_APPLICATION - ON DEM_APPLICATION - ON SWIMMING_DEM_APPLICATION - ON PARTICLE_MECHANICS_APPLICATION - ON EXTERNAL_SOLVERS_APPLICATION - ON MESHING_APPLICATION - ON SHAPE_OPTIMIZATION_APPLICATION - ON MAPPING_APPLICATION - ON ********************************************************************** ********** LIST OF KRATOS APPLICATIONS THAT ARE SET TO OFF: ********** CONTACT_MECHANICS_APPLICATION - OFF MULTISCALE_APPLICATION - OFF PFEM_APPLICATION - OFF PFEM_SOLID_MECHANICS_APPLICATION - OFF PFEM_FLUID_DYNAMICS_APPLICATION - OFF TRILINOS_APPLICATION - OFF METIS_APPLICATION - OFF ADJOINT_FLUID_APPLICATION - OFF ********************************************************************** **** configuring KratosExternalSolversApplication **** -- Try OpenMP Fortran flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp additional default options were set for gfortran ----------------------****************---------------------- CMAKE_Fortran_FLAGS = -fopenmp -w -w -O3 -ffree-line-length-none -ffixed-line-length-none -cpp -fPIC **** configuring KratosSolidMechanicsApplication **** **** configuring KratosConstitutiveModelsApplication **** **** configuring KratosConvectionDiffusionApplication **** **** configuring KratosMeshingApplication **** **** configuring KratosStructuralMechanicsApplication **** **** configuring KratosFluidDynamicsApplication **** **** configuring KratosALEApplication **** **** configuring KratosFSIApplication **** **** configuring KratosEmpireApplication **** **** configuring KratosDEMApplication **** -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success **** configuring KratosSwimmingDEMApplication **** **** configuring KratosThermoMechanicalApplication **** **** configuring KratosPoromechanicsApplication **** **** configuring KratosParticleMechanicsApplication **** **** configuring KratosDamApplication **** **** configuring KratosShapeOptimizationApplication **** **** configuring KratosContactStructuralMechanicsApplication **** **** configuring KratosMappingApplication **** *****************************************************************************-------------******** /home/ubuntu/Kratos/external_libraries/triangle python libraries to be installed are: /usr/lib/x86_64-linux-gnu/libpython3.5m.so.1.0 -------------------------------- standard install dir /home/ubuntu/Kratos installed blas = /usr/lib/libblas/libblas.so.3.6.0 installed lapack = /usr/lib/lapack/liblapack.so.3.6.0/usr/lib/libblas/libblas.so.3.6.0 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: PARMETIS_ROOT_DIR TRILINOS_ROOT -- Build files have been written to: /home/ubuntu/Kratos/cmake_gcc UnitTests: ============= | / | ' / __| _` | __| _ \ __| . \ | ( | | ( |\__ \ _|\_\_| \__,_|\__|\___/ ____/ Multi-Physics 6.0.0--Custom .............x........................................s...s.............x................................ ---------------------------------------------------------------------- Ran 105 tests in 26.967s OK (skipped=2, expected failures=2) Running tests for KratosCore Running tests for MeshingApplication [Warning]: "nightly" test suite is empty Running tests for EmpireApplication [Warning]: No test script found for EmpireApplication Running tests for ConstitutiveModelsApplication ....... ---------------------------------------------------------------------- Ran 7 tests in 4.285s OK Running tests for ThermoMechanicalApplication [Warning]: No test script found for ThermoMechanicalApplication Running tests for StructuralMechanicsApplication ...........................................E..............s....................................................................sss ====================================================================== ERROR: test_execution (NightlyTests.MembraneQ4TrussPointLoadTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/tests/structural_mechanics_test_factory.py", line 39, in setUp self.test = structural_mechanics_analysis.StructuralMechanicsAnalysis(ProjectParameters) File "/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/python_scripts/structural_mechanics_analysis.py", line 36, in __init__ self.__CreateSolver(external_model_part) File "/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/python_scripts/structural_mechanics_analysis.py", line 115, in __CreateSolver self.solver.ReadModelPart() # TODO move to global instance File "/home/ubuntu/Kratos/applications/StructuralMechanicsApplication/python_scripts/structural_mechanics_solver.py", line 198, in ReadModelPart KratosMultiphysics.ModelPartIO(input_filename).ReadModelPart(self.main_model_part) RuntimeError: Error: attempting to add a new element with Id :5, unfortunately a (different) element with the same Id already exists in kratos/includes/model_part.h:735:void ModelPart::AddElements(TIteratorType, TIteratorType, ModelPart::IndexType) [with TIteratorType = boost::iterators::indirect_iterator<__gnu_cxx::__normal_iterator*, vector, allocator > > >,...>; ModelPart::IndexType = long unsigned int] kratos/includes/model_part.h:758:void ModelPart::AddElements(TIteratorType, TIteratorType, ModelPart::IndexType) [with TIteratorType = boost::iterators::indirect_iterator<__gnu_cxx::__normal_iterator*, vector, allocator > > >,...>; ModelPart::IndexType = long unsigned int] kratos/sources/model_part_io.cpp:1411:void ModelPartIO::ReadElementsBlock(ModelPart&) kratos/sources/model_part_io.cpp:473:virtual void ModelPartIO::ReadModelPart(ModelPart&) ---------------------------------------------------------------------- Ran 130 tests in 192.283s FAILED (errors=1, skipped=4) Running tests for DamApplication [Warning]: No test script found for DamApplication Running tests for SolidMechanicsApplication ...................................... ---------------------------------------------------------------------- Ran 38 tests in 218.514s OK Running tests for ShapeOptimizationApplication [Warning]: No test script found for ShapeOptimizationApplication Running tests for MappingApplication ... ---------------------------------------------------------------------- Ran 3 tests in 0.760s OK Running tests for SwimmingDEMApplication [Warning]: Application has been found in "swimming_DEM_application" directory but it was expected in "SwimmingDEMApplication". Please check the naming convention. [Warning]: No test script found for SwimmingDEMApplication Running tests for PoromechanicsApplication [Warning]: No test script found for PoromechanicsApplication Running tests for ALEApplication ........ ---------------------------------------------------------------------- Ran 8 tests in 20.702s OK [Warning]: Application has been found in "ALEapplication" directory but it was expected in "ALEApplication". Please check the naming convention. Running tests for FluidDynamicsApplication ................. ---------------------------------------------------------------------- Ran 17 tests in 412.912s OK Running tests for ExternalSolversApplication [Warning]: No test script found for ExternalSolversApplication Running tests for ParticleMechanicsApplication [Warning]: No test script found for ParticleMechanicsApplication Running tests for DEMApplication .. ---------------------------------------------------------------------- Ran 2 tests in 0.002s OK [Warning]: Application has been found in "DEM_application" directory but it was expected in "DEMApplication". Please check the naming convention. Running tests for ContactStructuralMechanicsApplication .....F.............F..............F.....F...F. ====================================================================== FAIL: test_execution (SmallTests.SimplePatchTestThreeDMeshTying) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/SmallTests.py", line 46, in test_execution self.test.Solve() File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/Kratos_Execute_Contact_Structural_Test.py", line 147, in Solve process.ExecuteFinalizeSolutionStep() File "/home/ubuntu/Kratos/kratos/python_scripts/from_json_check_result_process.py", line 156, in ExecuteFinalizeSolutionStep self.assertTrue(isclosethis, msg=(str(value) + " != " + str(value_json) + ", rel_tol = " + str(reltol) + ", abs_tol = " + str(tol) + " : Error checking node " + str(node.Id) + " " + variable_name + " results.")) AssertionError: False is not true : -0.02029059745708404 != -0.021754384522347566, rel_tol = 1e-06, abs_tol = 0.001 : Error checking node 195 DISPLACEMENT_Y results. Stdout: Computing model part: -computing_domain- model part Number of tables : 0 Number of sub model parts : 0 Mesh 0 : Number of Nodes : 432 Number of Properties : 5 Number of Elements : 264 Number of Conditions : 64 ====================================================================== FAIL: test_execution (SmallTests.ALMThreeDPatchNotMatchingTestContact) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/SmallTests.py", line 46, in test_execution self.test.Solve() File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/Kratos_Execute_Contact_Structural_Test.py", line 147, in Solve process.ExecuteFinalizeSolutionStep() File "/home/ubuntu/Kratos/kratos/python_scripts/from_json_check_result_process.py", line 156, in ExecuteFinalizeSolutionStep self.assertTrue(isclosethis, msg=(str(value) + " != " + str(value_json) + ", rel_tol = " + str(reltol) + ", abs_tol = " + str(tol) + " : Error checking node " + str(node.Id) + " " + variable_name + " results.")) AssertionError: False is not true : -0.0198265799649858 != -0.0210332979404018, rel_tol = 1e-06, abs_tol = 0.001 : Error checking node 195 DISPLACEMENT_Y results. Stdout: Computing model part: -computing_domain- model part Number of tables : 0 Number of sub model parts : 0 Mesh 0 : Number of Nodes : 432 Number of Properties : 5 Number of Elements : 264 Number of Conditions : 64 ====================================================================== FAIL: test_execution (SmallTests.ComponentsALMThreeDPatchNotMatchingTestContact) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/SmallTests.py", line 46, in test_execution self.test.Solve() File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/Kratos_Execute_Contact_Structural_Test.py", line 147, in Solve process.ExecuteFinalizeSolutionStep() File "/home/ubuntu/Kratos/kratos/python_scripts/from_json_check_result_process.py", line 156, in ExecuteFinalizeSolutionStep self.assertTrue(isclosethis, msg=(str(value) + " != " + str(value_json) + ", rel_tol = " + str(reltol) + ", abs_tol = " + str(tol) + " : Error checking node " + str(node.Id) + " " + variable_name + " results.")) AssertionError: False is not true : -0.01982620665073498 != -0.0210332979404018, rel_tol = 1e-06, abs_tol = 0.001 : Error checking node 195 DISPLACEMENT_Y results. Stdout: Computing model part: -computing_domain- model part Number of tables : 0 Number of sub model parts : 0 Mesh 0 : Number of Nodes : 432 Number of Properties : 5 Number of Elements : 264 Number of Conditions : 64 ====================================================================== FAIL: test_execution (NightlyTests.ALMHertzSimpleTestContact) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/NightlyTests.py", line 47, in test_execution self.test.Solve() File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/Kratos_Execute_Contact_Structural_Test.py", line 147, in Solve process.ExecuteFinalizeSolutionStep() File "/home/ubuntu/Kratos/kratos/python_scripts/from_json_check_result_process.py", line 156, in ExecuteFinalizeSolutionStep self.assertTrue(isclosethis, msg=(str(value) + " != " + str(value_json) + ", rel_tol = " + str(reltol) + ", abs_tol = " + str(tol) + " : Error checking node " + str(node.Id) + " " + variable_name + " results.")) AssertionError: False is not true : 38.02071471375326 != 21.14828809634873, rel_tol = 1e-06, abs_tol = 0.001 : Error checking node 674 AUGMENTED_NORMAL_CONTACT_PRESSURE results. Stdout: Computing model part: -computing_domain- model part Number of tables : 0 Number of sub model parts : 0 Mesh 0 : Number of Nodes : 3554 Number of Properties : 3 Number of Elements : 3400 Number of Conditions : 50 ====================================================================== FAIL: test_execution (NightlyTests.ComponentsALMHertzSimpleTestContact) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/NightlyTests.py", line 47, in test_execution self.test.Solve() File "/home/ubuntu/Kratos/applications/ContactStructuralMechanicsApplication/tests/Kratos_Execute_Contact_Structural_Test.py", line 147, in Solve process.ExecuteFinalizeSolutionStep() File "/home/ubuntu/Kratos/kratos/python_scripts/from_json_check_result_process.py", line 156, in ExecuteFinalizeSolutionStep self.assertTrue(isclosethis, msg=(str(value) + " != " + str(value_json) + ", rel_tol = " + str(reltol) + ", abs_tol = " + str(tol) + " : Error checking node " + str(node.Id) + " " + variable_name + " results.")) AssertionError: False is not true : 38.0208218917778 != 21.14828809634873, rel_tol = 1e-06, abs_tol = 0.001 : Error checking node 674 AUGMENTED_NORMAL_CONTACT_PRESSURE results. Stdout: Computing model part: -computing_domain- model part Number of tables : 0 Number of sub model parts : 0 Mesh 0 : Number of Nodes : 3554 Number of Properties : 3 Number of Elements : 3400 Number of Conditions : 50 ---------------------------------------------------------------------- Ran 46 tests in 178.737s FAILED (failures=5) Running tests for FSIApplication .................... ---------------------------------------------------------------------- Ran 20 tests in 3.172s OK [Warning]: Application has been found in "FSIapplication" directory but it was expected in "FSIApplication". Please check the naming convention. Running tests for ConvectionDiffusionApplication ..... ---------------------------------------------------------------------- Ran 5 tests in 5.943s OK [Warning]: Application has been found in "convection_diffusion_application" directory but it was expected in "ConvectionDiffusionApplication". Please check the naming convention. ............................................................................................................................................................................................................................................. Ran 237 of 238 test cases in 2.07148s. OK. Running cpp tests /home/ubuntu/Kratos/kratos/tests/test_KratosCore.py Tests for KratosCore finished in time (900s). /home/ubuntu/Kratos/applications//MeshingApplication/tests/test_MeshingApplication.py Tests for MeshingApplication finished in time (900s). /home/ubuntu/Kratos/applications//EmpireApplication/tests/test_EmpireApplication.py Tests for EmpireApplication finished in time (900s). /home/ubuntu/Kratos/applications//ConstitutiveModelsApplication/tests/test_ConstitutiveModelsApplication.py Tests for ConstitutiveModelsApplication finished in time (900s). /home/ubuntu/Kratos/applications//ThermoMechanicalApplication/tests/test_ThermoMechanicalApplication.py Tests for ThermoMechanicalApplication finished in time (900s). /home/ubuntu/Kratos/applications//StructuralMechanicsApplication/tests/test_StructuralMechanicsApplication.py Tests for StructuralMechanicsApplication finished in time (900s). /home/ubuntu/Kratos/applications//DamApplication/tests/test_DamApplication.py Tests for DamApplication finished in time (900s). /home/ubuntu/Kratos/applications//SolidMechanicsApplication/tests/test_SolidMechanicsApplication.py Tests for SolidMechanicsApplication finished in time (900s). /home/ubuntu/Kratos/applications//ShapeOptimizationApplication/tests/test_ShapeOptimizationApplication.py Tests for ShapeOptimizationApplication finished in time (900s). /home/ubuntu/Kratos/applications//MappingApplication/tests/test_MappingApplication.py Tests for MappingApplication finished in time (900s). /home/ubuntu/Kratos/applications//swimming_DEM_application/tests/test_SwimmingDEMApplication.py Tests for SwimmingDEMApplication finished in time (900s). /home/ubuntu/Kratos/applications//PoromechanicsApplication/tests/test_PoromechanicsApplication.py Tests for PoromechanicsApplication finished in time (900s). /home/ubuntu/Kratos/applications//ALEapplication/tests/test_ALEApplication.py Tests for ALEApplication finished in time (900s). /home/ubuntu/Kratos/applications//FluidDynamicsApplication/tests/test_FluidDynamicsApplication.py Tests for FluidDynamicsApplication finished in time (900s). /home/ubuntu/Kratos/applications//ExternalSolversApplication/tests/test_ExternalSolversApplication.py Tests for ExternalSolversApplication finished in time (900s). /home/ubuntu/Kratos/applications//ParticleMechanicsApplication/tests/test_ParticleMechanicsApplication.py Tests for ParticleMechanicsApplication finished in time (900s). /home/ubuntu/Kratos/applications//DEM_application/tests/test_DEMApplication.py Tests for DEMApplication finished in time (900s). /home/ubuntu/Kratos/applications//ContactStructuralMechanicsApplication/tests/test_ContactStructuralMechanicsApplication.py Tests for ContactStructuralMechanicsApplication finished in time (900s). /home/ubuntu/Kratos/applications//FSIapplication/tests/test_FSIApplication.py Tests for FSIApplication finished in time (900s). /home/ubuntu/Kratos/applications//convection_diffusion_application/tests/test_ConvectionDiffusionApplication.py Tests for ConvectionDiffusionApplication finished in time (900s).