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<p>The last version was comipiled and install suscessfuly.</p>
<p>Now i am compiling kratos kratos and its all OK.</p>
<p>However when i begin to run the bechmarking examples</p>
<p>defined in trilinos applications appears the following;</p>
<p>&nbsp;</p>
<p>dofs for the dynamic structural solution added correctly<br />Linear elastic model selected<br />line49<br />0.0<br />line49<br />0.001<br />line49<br />0.002<br />line49<br />0.003<br />line49<br />0.004<br />0 : BaseType::mEquationSystemSize = 2002<br />0 : mLocalSystemSize = 2002<br />0 : free_offset = 2002<br />entering ResizeAndInitializeVectors<br />TSparseSpace::Size1(*pA) : 2002<br />TSparseSpace::Size(*pb) : 2002<br />finished ResizeAndInitializeVectors<br />[nelson:03271] *** Process received signal ***<br />[nelson:03271] Signal: Segmentation fault (11)<br />[nelson:03271] Signal code: Address not mapped (1)<br />[nelson:03271] Failing at address: 0x80551ed40<br />[nelson:03271] [ 0] /lib/libpthread.so.0(+0xf8f0) [0x7ff8edd8d8f0]<br />[nelson:03271] [ 1] /home/nelson/kratos/libs/KratosStructuralApplication.so(_ZN6Kratos6Face2D12CalculateAllERN5boost7numeric5ublas6matrixIdNS3_15basic_row_majorImlEENS3_15unbounded_arrayIdSaIdEEEEERNS3_6vectorIdS9_EERNS_11ProcessInfoEbb+0x1ef) [0x7ff8e36f16ff]<br />[nelson:03271] [ 2] /home/nelson/kratos/libs/KratosStructuralApplication.so(_ZN6Kratos6Face2D20CalculateLocalSystemERN5boost7numeric5ublas6matrixIdNS3_15basic_row_majorImlEENS3_15unbounded_arrayIdSaIdEEEEERNS3_6vectorIdS9_EERNS_11ProcessInfoE+0xf) [0x7ff8e36f14ff]<br />[nelson:03271] [ 3] /home/nelson/kratos/libs/KratosTrilinosApplication.so(_ZN6Kratos50TrilinosResidualBasedIncrementalUpdateStaticSchemeINS_13TrilinosSpaceI18Epetra_FECrsMatrix15Epetra_FEVectorEENS_10UblasSpaceIdN5boost7numeric5ublas6matrixIdNS8_15basic_row_majorImlEENS8_15unbounded_arrayIdSaIdEEEEENS8_6vectorIdSE_EEEEE38Condition_CalculateSystemContributionsENS6_10shared_ptrINS_9ConditionEEERSF_RSH_RSt6vectorImSaImEERNS_11ProcessInfoE+0x55) [0x7ff8e2098da5]<br />[nelson:03271] [ 4] /home/nelson/kratos/libs/KratosTrilinosApplication.so(_ZN6Kratos29TrilinosBlockBuilderAndSolverINS_13TrilinosSpaceI18Epetra_FECrsMatrix15Epetra_FEVectorEENS_10UblasSpaceIdN5boost7numeric5ublas6matrixIdNS8_15basic_row_majorImlEENS8_15unbounded_arrayIdSaIdEEEEENS8_6vectorIdSE_EEEENS_12LinearSolverIS4_SI_NS_9ReordererIS4_SI_EEEEE5BuildENS6_10shared_ptrINS_6SchemeIS4_SI_EEEERNS_9ModelPartERS2_RS3_+0x371) [0x7ff8e21dede1]<br />[nelson:03271] [ 5] /home/nelson/kratos/libs/KratosTrilinosApplication.so(_ZN6Kratos29TrilinosBlockBuilderAndSolverINS_13TrilinosSpaceI18Epetra_FECrsMatrix15Epetra_FEVectorEENS_10UblasSpaceIdN5boost7numeric5ublas6matrixIdNS8_15basic_row_majorImlEENS8_15unbounded_arrayIdSaIdEEEEENS8_6vectorIdSE_EEEENS_12LinearSolverIS4_SI_NS_9ReordererIS4_SI_EEEEE13BuildAndSolveENS6_10shared_ptrINS_6SchemeIS4_SI_EEEERNS_9ModelPartERS2_RS3_SV_+0x84) [0x7ff8e21e2274]<br />[nelson:03271] [ 6] /home/nelson/kratos/libs/KratosTrilinosApplication.so(_ZN5boost6python6detail6invokeIiMN6Kratos29TrilinosBlockBuilderAndSolverINS3_13TrilinosSpaceI18Epetra_FECrsMatrix15Epetra_FEVectorEENS3_10UblasSpaceIdNS_7numeric5ublas6matrixIdNSB_15basic_row_majorImlEENSB_15unbounded_arrayIdSaIdEEEEENSB_6vectorIdSH_EEEENS3_12LinearSolverIS8_SL_NS3_9ReordererIS8_SL_EEEEEEFvNS_10shared_ptrINS3_6SchemeIS8_SL_EEEERNS3_9ModelPartERS6_RS7_SY_ENS0_15arg_from_pythonIRSQ_EENS11_ISU_EENS11_ISW_EENS11_ISX_EENS11_ISY_EES17_EEP7_objectNS1_11invoke_tag_ILb1ELb1EEERKT_RT0_RT1_RT2_RT3_RT4_RT5_RT6_+0x9d) [0x7ff8e22218fd]<br />[nelson:03271] [ 7] /home/nelson/kratos/libs/KratosTrilinosApplication.so(_ZN5boost6python6detail12caller_arityILj6EE4implIMN6Kratos29TrilinosBlockBuilderAndSolverINS5_13TrilinosSpaceI18Epetra_FECrsMatrix15Epetra_FEVectorEENS5_10UblasSpaceIdNS_7numeric5ublas6matrixIdNSD_15basic_row_majorImlEENSD_15unbounded_arrayIdSaIdEEEEENSD_6vectorIdSJ_EEEENS5_12LinearSolverISA_SN_NS5_9ReordererISA_SN_EEEEEEFvNS_10shared_ptrINS5_6SchemeISA_SN_EEEERNS5_9ModelPartERS8_RS9_S10_ENS0_21default_call_policiesENS_3mpl7vector7IvRSS_SW_SY_SZ_S10_S10_EEEclEP7_objectS1A_+0x354) [0x7ff8e2221684]<br />[nelson:03271] [ 8] /home/nelson/kratos/libs/KratosTrilinosApplication.so(_ZN5boost6python7objects23caller_py_function_implINS0_6detail6callerIMN6Kratos29TrilinosBlockBuilderAndSolverINS5_13TrilinosSpaceI18Epetra_FECrsMatrix15Epetra_FEVectorEENS5_10UblasSpaceIdNS_7numeric5ublas6matrixIdNSD_15basic_row_majorImlEENSD_15unbounded_arrayIdSaIdEEEEENSD_6vectorIdSJ_EEEENS5_12LinearSolverISA_SN_NS5_9ReordererISA_SN_EEEEEEFvNS_10shared_ptrINS5_6SchemeISA_SN_EEEERNS5_9ModelPartERS8_RS9_S10_ENS0_21default_call_policiesENS_3mpl7vector7IvRSS_SW_SY_SZ_S10_S10_EEEEEclEP7_objectS1B_+0xa) [0x7ff8e222132a]<br />[nelson:03271] [ 9] /usr/local/lib/libboost_python.so.1.53.0(_ZNK5boost6python7objects8function4callEP7_objectS4_+0x101) [0x7ff8eb3b9a11]<br />[nelson:03271] [10] /usr/local/lib/libboost_python.so.1.53.0(+0x31ea8) [0x7ff8eb3b9ea8]<br />[nelson:03271] [11] /usr/local/lib/libboost_python.so.1.53.0(_ZN5boost6python21handle_exception_implENS_9function0IvEE+0x5b) [0x7ff8eb3c1b5b]<br />[nelson:03271] [12] /usr/local/lib/libboost_python.so.1.53.0(+0x2e6d8) [0x7ff8eb3b66d8]<br />[nelson:03271] [13] python(PyObject_Call+0x47) [0x41f227]<br />[nelson:03271] [14] python(PyEval_EvalFrameEx+0x4888) [0x4a7518]<br />[nelson:03271] [15] python(PyEval_EvalFrameEx+0x5a60) [0x4a86f0]<br />[nelson:03271] *** End of error message ***<br />--------------------------------------------------------------------------<br />mpirun noticed that process rank 0 with PID 3271 on node nelson exited on signal 11 (Segmentation fault).<br /><br /></p>
<p>&nbsp;</p>
<p>&nbsp;</p>
<p>&nbsp;</p>
<p>On Wed, 19 Jun 2013 08:46:26 +0200, Riccardo Rossi wrote:</p>
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<div>Dear Nelson,<br /><br />please make sure you updated to the latest version of the cmake_modules directory<br /><br /></div>
also please check carefully for the trilinos install path you give to the kratos<br />
<div><br />Riccardo<br /><br /></div>
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<div class="gmail_quote">On Tue, Jun 18, 2013 at 6:44 PM,  <span>&lt;<a href="mailto:maireni@cimne.upc.edu">maireni@cimne.upc.edu</a>&gt;</span> wrote:<br />
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<p>Hi Bui</p>
<p>I use the last version of trilinus. The compilation and the instalation was perfect.</p>
<p>However, when compile Kratos apears thi:</p>
<p>**** configuring KratosTrilinosApplication ****<br />-- Could NOT find EPETRA (missing:&nbsp; EPETRA_LIBRARY) <br />-- Could NOT find TEUCHOS (missing:&nbsp; TEUCHOS_LIBRARY) <br />-- Could NOT find TRIUTILS (missing:&nbsp; TRIUTILS_LIBRARY) <br /> CMake Error at cmake_modules/FindTRILINOS.cmake:221 (MESSAGE):<br />&nbsp; Could not find Trilinos or one of its packages.&nbsp; Please set the cmake var<br />&nbsp; TRILINOS_ROOT or the environment vars MY_TRILINOS_INC_DIRS and<br />&nbsp; MY_TRILINOS_LIB_DIRS<br /> Call Stack (most recent call first):<br />&nbsp; applications/trilinos_application/CMakeLists.txt:15 (find_package)</p>
<p>I set in the .basrc the corresponding path:</p>
<p>export LD_LIBRARY_PATH=/usr/local/trilinos-11.2.3/lib:$LD_LIBRARY_PATH</p>
<p>&nbsp;</p>
<p>but no compile yet. Any idea?</p>
<p>Regards</p>
<p>Nelson</p>
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<p>&nbsp;</p>
<p>&nbsp;</p>
<p>&nbsp;</p>
<p>On Tue, 18 Jun 2013 17:46:25 +0200, Hoang Giang Bui wrote:</p>
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<div><br />Hi<br /><br /></div>
Just a comment, you don't need PyTrilinos to work with kratos. You can turn this off by<br /><br />-D Trilinos_ENABLE_PyTrilinos=OFF \<br /><br /></div>
to your configure script.<br /><br /></div>
Ciao<br />Bui<br /><br /></div>
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<div class="h5">On Tue, Jun 18, 2013 at 4:22 PM, Nelson Lafontaine <span>&lt;<a href="mailto:inglafontaine@gmail.com">inglafontaine@gmail.com</a>&gt;</span> wrote:</div>
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Hi frinds</div>
Trying to compile and install trilinos</div>
i have this mistake.<br /><br /></div>
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<strong>
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<div class="h5">[ 91%] Building CXX object packages/PyTrilinos/src/CMakeFiles/EpetraExt.dir/EpetraExtPYTHON_wrap.cpp.o<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp: In function &lsquo;PyObject* _wrap_CrsGraph_MapColoring___call__(PyObject*, PyObject*)&rsquo;:<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9019: error: &lsquo;arg2&rsquo; declared as reference but not initialized<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9026: error: &lsquo;result&rsquo; declared as reference but not initialized<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9042: error: cannot declare pointer to &lsquo;class Epetra_CrsGraph&amp;&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9042: error: cannot declare pointer to &lsquo;class Epetra_CrsGraph&amp;&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/packages/epetra/src/Epetra_MapColoring.h:300: error: &lsquo;Epetra_MapColoring&amp; Epetra_MapColoring::operator=(const Epetra_MapColoring&amp;)&rsquo; is private<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9050: error: within this context<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9082: error: cannot declare reference to &lsquo;class Epetra_MapColoring&amp;&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9082: error: new cannot be applied to a reference type<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp: In function &lsquo;PyObject* _wrap_CrsGraph_MapColoringIndex___call__(PyObject*, PyObject*)&rsquo;:<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9213: error: &lsquo;OriginalTypeRef&rsquo; was not declared in this scope<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9213: error: expected &lsquo;;&rsquo; before &lsquo;arg2&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9220: error: &lsquo;NewTypeRef&rsquo; was not declared in this scope<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9220: error: expected &lsquo;;&rsquo; before &lsquo;result&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9236: error: &lsquo;temp&rsquo; was not declared in this scope<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9236: error: expected type-specifier before &lsquo;OriginalTypeRef&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9236: error: expected &lsquo;&gt;&rsquo; before &lsquo;OriginalTypeRef&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9236: error: expected &lsquo;(&rsquo; before &lsquo;OriginalTypeRef&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9236: error: expected primary-expression before &lsquo;&gt;&rsquo; token<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9236: error: expected &lsquo;)&rsquo; before &lsquo;;&rsquo; token<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9237: error: &lsquo;arg2&rsquo; was not declared in this scope</div>
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/home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9238: error: type &lsquo;&rsquo; argument given to &lsquo;delete&rsquo;, expected pointer
<div class="im"><br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9244: error: &lsquo;result&rsquo; was not declared in this scope<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9244: error: &lsquo;arg2&rsquo; was not declared in this scope<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9276: error: expected type-specifier before &lsquo;NewTypeRef&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9276: error: expected &lsquo;)&rsquo; before &lsquo;NewTypeRef&rsquo;<br /> /home/nelson/compiled_libraries/trilinos-10.2.0-Source/trilinos-build/packages/PyTrilinos/src/EpetraExtPYTHON_wrap.cpp:9276: error: expected &lsquo;)&rsquo; before &lsquo;;&rsquo; token<br /> make[2]: *** [packages/PyTrilinos/src/CMakeFiles/EpetraExt.dir/EpetraExtPYTHON_wrap.cpp.o] Error 1<br /> make[1]: *** [packages/PyTrilinos/src/CMakeFiles/EpetraExt.dir/all] Error 2<br />make: *** [all] Error 2<br />nelson@nelson:~/compiled_librari<br /><br /><br /></div>
</strong></div>
<div class="im"><strong>Any idea? I am watching the file, but i did not founf any anormal<br /></strong></div>
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<strong>thing.<br /><br /></strong></div>
<strong>regards<span><span style="color: #888888;"><br /><br /></span></span></strong></div>
<div class="im"><span><span style="color: #888888;"><strong>Nelson<br /><br /></strong>
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<div><br />-- <br />Ing. Nelson M. Lafontaine<br /><br /></div>
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<div class="im"><br />_______________________________________________<br /> Kratos mailing list<br /><a href="mailto:Kratos@listas.cimne.upc.edu">Kratos@listas.cimne.upc.edu</a><br /><a href="http://listas.cimne.upc.edu/cgi-bin/mailman/listinfo/kratos">http://listas.cimne.upc.edu/cgi-bin/mailman/listinfo/kratos</a><br /><br /></div>
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<div class="im"><br /><br /><br /><br />-- <br />With Best Regards !<br />Giang Bui
<div>To learn and to excel</div>
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<p>&nbsp;</p>
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<br />_______________________________________________<br /> Kratos mailing list<br /><a href="mailto:Kratos@listas.cimne.upc.edu">Kratos@listas.cimne.upc.edu</a><br /><a href="http://listas.cimne.upc.edu/cgi-bin/mailman/listinfo/kratos">http://listas.cimne.upc.edu/cgi-bin/mailman/listinfo/kratos</a><br /><br /></span></blockquote>
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<span style="text-decoration: underline;"><br /><br /><br /><br />-- <br />
<p><span style="font-size: 10.0pt;">Dr. Riccardo Rossi, Civil Engineer<br /></span></p>
<p><span style="font-size: 10.0pt;">Member of Kratos Team<span style="color: #1f497d;"> </span></span></p>
<p><span style="font-size: 10.0pt; color: #1f497d;">International Center for Numerical Methods in Engineering - CIMNE<br /> Campus Norte, Edificio C1</span><span style="color: #1f497d;">&nbsp;</span></p>
<p style="text-align: justify;"><span style="font-size: 10.0pt; color: #1f497d;">c/ Gran Capit&aacute;n s/n</span></p>
<p style="text-align: justify;"><span style="font-size: 10.0pt; color: #1f497d;">08034 Barcelona, Espa&ntilde;a</span></p>
<p style="text-align: justify;"><span style="font-size: 10.0pt; color: #1f497d;">Tel:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <a>(+34) 93 401 56 96</a></span></p>
<p style="text-align: justify;"><span style="font-size: 10.0pt; color: #1f497d;">Fax:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <a>(+34) 93.401.6517</a></span></p>
<span style="font-size: 10.0pt; color: #1f497d;">web:</span><span style="font-size: 10.0pt;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span><span><a href="http://www.cimne.com/"><span style="font-size: 10.0pt;">www.cimne.com</span></a></span> </span></div>
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